Genetics and Genomics of Rosaceae (eBook)

Kevin M. Folta, Susan E. Gardiner (Herausgeber)

eBook Download: PDF

2009 | 2009
XVII, 636 Seiten
Springer New York (Verlag)
978-0-387-77491-6 (ISBN)

Infos

This is the first book on Rosaceae genomics. It covers progress in recent genomic research among the Rosaceae, grounding this firmly in the historical context of genetic studies and in the application of genomics technologies for crop development.

Inhalt

Preface 5
Contents 7
Contributors 10
Introduction 16
1. Rosaceae: Taxonomy, Economic Importance, Genomics 17
1 Nomenclature and Taxonomy 17
2 Economic Importance 23
3 Rosaceae Genomics 29
4 The Future 32
References 32
2. Genomics Approaches to Crop Improvement in the Rosaceae 34
1 Use of Genomics in Rosaceae 34
2 Conclusions 61
References 62
3. Genomics Opportunities, New Crops and New Products 69
1 Introduction 69
2 Current Use of MAS in Rosaceae Breeding Programs 70
3 Traits for Which Markers are Currently Available for Use in Developing New Crops 73
4 Conclusion 79
References 80
Part I Apples (Chapters 4 – 7) 85
4. Introduction to Apple (Malus × domestica) 86
1 Origin and History 86
2 Apple Production Worldwide 87
3 Breeding 88
4 Genetic Resources 92
5 Looking Forward 94
References 94
5. Apple Structural Genomics 98
1 Introduction 98
2 Use of DNA Markers for Evaluating Genetic Diversity in Apple 100
3 Linkage and PhysicalMaps 104
4 Genomic Location of Some Monogenic and Polygenic Traits 107
5 Marker-Assisted Selection 122
6 Current and Future Developments 123
References 124
6. Apple Functional Genomics 133
1 Malus EST Datasets 133
2 GC Content and Codon Usage 141
3 MicroRNAs and Their Targets Identified from EST Databases 143
4 Global Changes in Apple Gene Expression 145
5 Heterologous Microarrays 150
6 Heterologous Expression of Apple Genes in Arabidopsis 151
7 Transient Assays of Apple Genes in Tobacco 152
8 Apple Functional Genomics 153
References 153
7. Apple Transformation and Translational Genomics 155
1 Introduction 155
2 Reverse genetic, Gene Function Validation 156
3 Conclusions 169
References 170
8. Pear Genomics 175
1 Introduction 175
2 Structural Genomics 180
References 193
9. Genomics of Almond 199
1 History and Evolution 199
2 Breeding for Improved Cultivars 200
3 Development of Molecular Markers and Variability Analysis in Almond 201
4 Marker Maps: Major Gene and QTL Mapping 203
5 Gene Cloning and EST Collections 206
6 Genetic Transformation 206
7 Main Agronomic Characters, and Their Genetic Basis 209
8 Future Prospects 220
References 224
Part II Peach (Chapters 10 – 13) 232
10. An Introduction to Peach (Prunus persica) 233
1 Introduction 233
2 Traits of Primary Interest for Traditional Breeding Programs 235
References 240
11. Peach Structural Genomics 245
1 Molecular Markers and Breeding in Peach 245
2 Comparative Genomics in Prunus 249
3 Mapping Polygenic Traits in Peach 252
4 Functional Markers in Peach 257
5 Marker Assisted Selection (MAS) in Peach 259
6 Peach Physical Mapping 261
References 263
12. Functional Genomics in Peach 268
1 Introduction 268
2 Proteomics Analysis 271
3 Functional Genomics Tools in Rosaceae 272
4 Functional Genomics Candidate Gene Databases 274
5 The Transcriptome 275
6 The Peach Integrated Genetic/Physical/EST Functional Genomics Database 276
7 The Prunus Resistance Gene Map as a Functional Genomics Tool 277
8 The Peach Proteome 279
9 Perspectives 280
References 280
13. Genetic Engineering of Plum (Prunusdomestica L.) for Plant Improvement andGenomics Research in Rosaceae 285
1 Introduction 285
2 The Plum System 286
3 Future Applications 292
4 Conclusions 295
References 296
14. Sweet and Sour Cherries: Linkage Maps, QTL Detection and Marker Assisted Selection 299
1 Introduction 299
2 Construction of Genetic Maps 303
3 Gene Mapping and QTLs Detected 307
4 Analysis of Self Incompatibility 311
5 Conclusion and Future Scope of Work 315
References 316
15. Genomics-Based Opportunities in Apricot 322
1 Introduction 322
2 Molecular Markers 326
3 Significant Traits 330
4 Genomics Resources 336
5 Regeneration and Transformation 336
6 Conclusions 337
References 337
Part III Rose (Chapters 16 – 19) 343
16. Introduction to Rosa 344
1 Major Economic Use/Value of Roses and Limitations to Production 344
2 Garden Roses (Including Landscape Roses) 344
3 CutRoses 346
4 PotRoses 346
5 Rose Oil Production 347
6 Ornamental Fruits 347
7 Culinary and Medicinal Fruits 348
8 Rootstocks 348
9 Taxonomy and Classification 349
10 Available Genetic Resources 352
11 Major Features of Rose Genetics 352
12 Cross Breeding 353
References 354
17. Rose Structural Genomics 357
1 DNA Markers Available and Future Developments 357
2 Use of Markers for Identification and Studies of Rose Population Structure, Taxonomy, Domestication, and Diversity Studies 360
3 Current Situation for Linkage Maps 361
4 Inheritance of Known Characters 368
5 Flower Traits 368
6 PlantTraits 374
7 Adaptation Traits 375
8 Physical Maps, BAC Libraries and Current Situation for Positional Cloning 376
9 Synteny to Other Rosaceous Crops 377
References 378
18. Functional Genomics in Rose 384
1 Introduction 384
2 The Tools Available for the Genomic Approaches 384
3 Ethylene Signaling and Metabolism and Its Involvement in Rose Opening and Senescence 390
4 Cloning of Genes Involved in Ethylene Signaling and Synthesis 390
5 Ethylene and Flower Opening 391
6 Ethylene and Flower Senescence 391
7 Anthocyanin Biosynthesis in Flower Color 392
References 393
19. Genetic Engineering and Tissue Culture of Roses 396
1 Introduction 396
2 Regeneration 397
3 Genetic Transformation 400
4 Gene Function Studies by Expression in Model Organisms 404
References 408
Part IV Strawberry (Chapters 20 – 23) 413
20. Strawberry Genomics: Botanical History, Cultivation, Traditional Breeding, and New Technologies 414
1 Origin, Speciation, and Evolution 414
2 Diploid Species 415
3 Higher Ploidy Species 420
4 Cultivated Octoploid Strawberries 422
5 Intergeneric Hybrid 423
6 History of Cultivation 423
7 Traditional Breeding 427
8 Structural Genomics 429
9 Functional Genomics 430
10 Biotechnological Approaches to Genetic Improvement 430
References 432
21. Strawberry (Fragaria spp.) StructuralGenomics 437
1 Cytology and Interfertility 437
2 Phylogenetic Analyses 439
3 Molecular Markers 439
4 Resistance Gene Analogues 444
5 Linkage and PhysicalMaps-Diploid 444
6 Whole Genome Sequencing 450
References 451
22. Functional Molecular Biology Research in Fragaria 457
1 Introduction 457
2 Fruit-Related Traits 458
3 Volatile Compounds 458
4 Polyphenol Compounds 462
5 Fruit Firmness 466
6 Hormone Metabolism 469
7 Vitamins 470
8 Sugar and Acid Composition 470
9 Allergens 471
10 Control of Flowering 472
11 Resistance to Abiotic Stress 473
12 Resistance to Biotic Agents 475
References 477
23. GMO Strawberry: Methods, Risk and Benefits 487
1 Introduction 487
2 Strawberry Regeneration and Agrobacterium Transformation 488
3 Genes for Strawberry Improvement 491
4 Biotechnology for Berry Nutritional Quality 497
5 GM Strawberry Field Trials and Risk Assessment 499
6 Conclusions 501
References 502
24. Raspberries and Blackberries:The Genomics of Rubus 507
1 Taxonomy 507
2 Diversity 507
3 Breeding Objectives 509
4 Limitations 511
5 Structural Genomics 512
6 DNA Markers 512
7 Linkage Mapping 513
8 Physical Mapping 516
9 Functional Genomics 517
10 Future Strategies 519
References 519
25. Loquat (Eriobotrya Lindl.) 525
1 Origin and Botany 525
2 Genetic Resources and Diversity 526
3 Genetic Mapping 532
4 Biotechnology Techniques Applied in Loquat Breeding 535
References 535
26. Genomics Tools Across Rosaceae Species 539
1 Introduction – Toward a Rosaceae Genome as a Unique System? 539
2 The Genome Structure of Rosaceae 541
3 Tools for Genomics Analyses in Rosaceae 544
4 Challenges for the Future 552
References 554
27. Application of Genetic Markers in Rosaceous Crops 562
1 Introduction 562
2 The Cost/Benefit of Marker Assisted Selection 564
3 Marker Applications in the Rosaceae 568
4 Marker Assisted Selection 570
5 Prunus 575
6 Fragaria 579
7 Rubus 580
8 Background Selection 581
9 Conclusion and Perspectives 583
References 584
28. Rosaceaous Genome Sequencing: Perspectives and Progress 599
1 Plant Genome Sequencing Overview and History 599
2 Sequencing Technologies 602
3 Next Generation Technologies 603
4 Peach Genome Sequencing 604
5 Apple Genome Sequencing 606
6 Fragaria Genome Sequencing 608
References 610
Index 614

Produkt-Details

• Erscheint lt. Verlag: 28.5.2009
• Reihe/Serie: Plant Genetics and Genomics: Crops and Models
• Reihe/Serie: Plant Genetics and Genomics: Crops and Models
• Zusatzinfo: XVII, 636 p.
• Verlagsort: New York
• Sprache: englisch
• Themenwelt: Naturwissenschaften ► Biologie ► Botanik
• Themenwelt: Technik
• Schlagworte: currentjks • fruit genomics • Genetic Engineering • genomics • plant genomics • Rosaceae • Translation
• ISBN-10: 0-387-77491-2 / 0387774912
• ISBN-13: 978-0-387-77491-6 / 9780387774916