Reproducible Research with R and R Studio
Crc Press Inc (Verlag)
978-1-4665-7284-3 (ISBN)
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With straightforward examples, the book takes you through a reproducible research workflow, showing you how to use:
R for dynamic data gathering and automated results presentation
knitr for combining statistical analysis and results into one document
LaTeX for creating PDF articles and slide shows, and Markdown and HTML for presenting results on the web
Cloud storage and versioning services that can store data, code, and presentation files; save previous versions of the files; and make the information widely available
Unix-like shell programs for compiling large projects and converting documents from one markup language to another
RStudio to tightly integrate reproducible research tools in one place
Whether you’re an advanced user or just getting started with tools such as R and LaTeX, this book saves you time searching for information and helps you successfully carry out computational research. It provides a practical reproducible research workflow that you can use to gather and analyze data as well as dynamically present results in print and on the web. Supplementary files used for the examples and a reproducible research project are available on the author’s website.
Christopher Gandrud is a research associate at the Hertie School of Governance. He was previously a lecturer of international relations at Yonsei University and a fellow in government at the London School of Economics (LSE). He has published articles on political economy and quantitative methods in the Review of International Political Economy and the International Political Science Review. He earned a PhD in political science from the LSE.
Getting Started
Introducing Reproducible Research
What Is Reproducible Research?
Why Should Research Be Reproducible?
Who Should Read This Book?
The Tools of Reproducible Research
Why Use R, knitr, and RStudio for Reproducible Research?
Book Overview
Getting Started with Reproducible Research
The Big Picture: A Workflow for Reproducible Research
Practical Tips for Reproducible Research
Getting Started with R, RStudio, and knitr
Using R: The Basics
Using RStudio
Using knitr: The Basics
Getting Started with File Management
File Paths and Naming Conventions
Organizing Your Research Project
Setting Directories as RStudio Projects
R File Manipulation Commands
Unix-like Shell Commands for File Management
File Navigation in RStudio
Data Gathering and Storage
Storing, Collaborating, Accessing Files, and Versioning
Saving Data in Reproducible Formats
Storing Your Files in the Cloud: Dropbox
Storing Your Files in the Cloud: GitHub
RStudio and GitHub
Gathering Data with R
Organize Your Data Gathering: Makefiles
Importing Locally Stored Data Sets
Importing Data Sets from the Internet
Advanced Automatic Data Gathering: Web Scraping
Preparing Data for Analysis
Cleaning Data for Merging
Merging Data Sets
Analysis and Results
Statistical Modeling and knitr
Incorporating Analyses into the Markup
Dynamically Including Modular Analysis Files
Reproducibly Random: set.seed
Computationally Intensive Analyses
Showing Results with Tables
Basic knitr Syntax for Tables
Table Basics
Creating Tables from R Objects
Showing Results with Figures
Including Non-knitted Graphics
Basic knitr Figure Options
Knitting R’s Default Graphics
Including ggplot2 Graphics
JavaScript graphs with googleVis
Presentation Documents
Presenting with LaTeX
The Basics
Bibliographies with BibTeX
Presentations with LaTeX Beamer
Large LaTeX Documents: Theses, Books, and Batch Reports
Planning Large Documents
Large Documents with Traditional LaTeX
knitr and Large Documents
Child Documents in a Different Markup Language
Creating Batch Reports
Presenting on the Web with Markdown
The Basics
Markdown with Pandoc and Custom CSS
Slideshows with Markdown, knitr, and HTML
Publishing Markdown Documents
Conclusion
Citing Reproducible Research
Licensing Your Reproducible Research
Sharing Your Code in Packages
Project Development: Public or Private?
Is it Possible to Completely Future Proof Your Research?
Bibliography
Index
| Reihe/Serie | Chapman & Hall/CRC: The R Series |
|---|---|
| Zusatzinfo | 16 Tables, black and white; 33 Illustrations, black and white |
| Verlagsort | Bosa Roca |
| Sprache | englisch |
| Maße | 156 x 234 mm |
| Gewicht | 454 g |
| Themenwelt | Mathematik / Informatik ► Mathematik ► Computerprogramme / Computeralgebra |
| Naturwissenschaften ► Biologie | |
| ISBN-10 | 1-4665-7284-1 / 1466572841 |
| ISBN-13 | 978-1-4665-7284-3 / 9781466572843 |
| Zustand | Neuware |
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