Plant Comparative Genomics
Springer-Verlag New York Inc.
978-1-0716-2431-9 (ISBN)
Authoritative and practical, Plant Comparative Genomics serves as an ideal resource for researchers looking to implement comparative tools in order to explore their genomic data for their daily scientific work.
lt;p>Part I: Phylogenetics and Evolution
1. Orthology Prediction and Phylogenetic Analysis Methods in Plants
Abdoallah Sharaf and Sawsan Elateek
2. Species Tree Inference with SNP Data
Michael Matschiner
3. High-Throughput Evolutionary Comparative Analysis of Long Intergenic Non-Coding RNAs in Multiple Organisms
Anna C. Nelson Dittrich and Andrew D.L. Nelson
4. NGS-Indel Coder v2.0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data
Julien Boutte, Mark Fishbein, and Shannon C.K. Straub
5. An SGSGeneloss-Based Method for Constructing a Gene Presence/Absence Table Using Mosdepth
Cassandria G. Tay Fernandez, Jacob I. Marsh, Benjamin J. Nestor, Mitchell Gill, Agnieszka A. Golicz, Philipp E. Bayer, and David Edwards
6. POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes
Yue Hao and Gavin C. Conant
Part II: Omics Analysis
7. Searching for Homologous Genes Using Daisychain
Philipp E. Bayer and David Edwards
8. Detecting MicroRNAs in Plant Genomes with miRkwood
Sylvain Legrand, Isabelle Guigon, and Hélène Touzet
9. Pangenome Analysis of Plant Transcripts and Coding Sequences
Bruno Contreras-Moreira, Alvaro Rodriguez del Río, Carlos P. Cantalapiedra, Rubén Sancho, and Pablo Vinuesa
10. Metagenomics Bioinformatic Pipeline
Diego Garfias-Gallegos, Claudia Zirión-Martínez, Edder D. Bustos-Díaz, Tania Vanessa Arellano-Fernandez, José Abel Lovaco-Flores, Aarón Espinosa-Jaime, J. Abraham Avelar-Rivas, and Nelly Sélem-Mójica
11. Rhizosphere and Endosphere Bacterial Communities Survey by Metagenomics Approach
Victoria Mesa
12. Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants
Samuel David Gamboa-Tuz, Alejandro Pereira-Santana, Tao Zhao, and M. Eric Schranz
13. Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis
Francisco J. Pérez-de los Santos, Jesús Emiliano Sotelo-Fonseca, América Ramírez-Colmenero, Hans-Wilhelm Nützmann, Selene L. Fernandez-Valverde, and Katarzyna Oktaba
14. Isolation of Boechera stricta Developing Embryos for Hi-C
Mariana Tiscareño-Andrade, Katarzyna Oktaba, and Jean-Philippe Vielle-Calzada
Part III: Experimental Procedures for Trait Characterization
15. Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens
Oscar Estrada, Stephen M. Richards, and James Breen
16. Use of Allele-Specific Amplification for Rapid Identification of Aromatic and Non-Aromatic Rice Germplasms
Debarati Chakraborty
17. Efficient Protein Extraction Protocols for NanoLC-MS/MS Proteomics Analysis of Plant Tissues with High Proteolytic Activity: A Case Study with Pineapple Pulp
Esaú Bojórquez-Velázquez, José M. Elizalde-Contreras, Jesús Alejandro Zamora-Briseño, and Eliel Ruiz-May
| Erscheinungsdatum | 18.07.2023 |
|---|---|
| Reihe/Serie | Methods in Molecular Biology |
| Zusatzinfo | 54 Illustrations, color; 9 Illustrations, black and white; XI, 294 p. 63 illus., 54 illus. in color. |
| Verlagsort | New York, NY |
| Sprache | englisch |
| Maße | 178 x 254 mm |
| Themenwelt | Naturwissenschaften ► Biologie ► Botanik |
| Naturwissenschaften ► Biologie ► Genetik / Molekularbiologie | |
| Schlagworte | Bioinformatic tools • Data Visualization • Genomic Information • Next-generation sequencing technologies • Phylogenomics • Trait characterization |
| ISBN-10 | 1-0716-2431-8 / 1071624318 |
| ISBN-13 | 978-1-0716-2431-9 / 9781071624319 |
| Zustand | Neuware |
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