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Metabolic Pathway Design - Pablo Carbonell

Metabolic Pathway Design

A Practical Guide

(Autor)

Buch | Softcover
X, 168 Seiten
2019 | 1st ed. 2019
Springer International Publishing (Verlag)
978-3-030-29864-7 (ISBN)
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This textbook presents solid tools for in silico engineering biology, offering students a step-by-step guide to mastering the smart design of metabolic pathways. The first part explains the Design-Build-Test-Learn-cycle engineering approach to biology, discussing the basic tools to model biological and chemistry-based systems. Using these basic tools, the second part focuses on various computational protocols for metabolic pathway design, from enzyme selection to pathway discovery and enumeration. In the context of industrial biotechnology, the final part helps readers understand the challenges of scaling up and optimisation. By working with the free programming language Scientific Python, this book provides easily accessible tools for studying and learning the principles of modern in silico metabolic pathway design. Intended for advanced undergraduates and master's students in biotechnology, biomedical engineering, bioinformatics and systems biology students, the introductory sections make it also useful for beginners wanting to learn the basics of scientific coding and find real-world, hands-on examples.


Pablo Carbonell is a senior staff scientist at the SynBioChem Centre, Manchester Institute of Biotechnology. His field of research is automated design for metabolic engineering and synthetic biology. Pablo has developed several bioretrosynthesis-based pathway design tools, including RetroPath, XTMS, EcoliTox, Selenzyme for enzyme selection and Promis for protein design. He is interested in applying the principles of machine learning and control engineering to sustainable biological design. He has contributed to the development of several theoretical models for bio-based, bionics systems - from biosensors to robotic exoskeletons.

Part I. Metabolic Pathway Modeling.- Getting on the Path to Engineering Biology.- Genome-Scale Modeling.- Pathway Modeling.- Modeling Chemical Diversity.- Part II. Metabolic Pathway Discovery.- Enzyme Discovery and Selection.- Pathway Discovery.- Pathway Selection.- Part III. Metabolic Pathway Design.- Pathway Design.- Pathway Redesign.

Erscheinungsdatum
Reihe/Serie Learning Materials in Biosciences
Zusatzinfo X, 168 p. 44 illus. in color.
Verlagsort Cham
Sprache englisch
Maße 168 x 240 mm
Gewicht 315 g
Themenwelt Informatik Weitere Themen Bioinformatik
Medizin / Pharmazie Physiotherapie / Ergotherapie Orthopädie
Naturwissenschaften Biologie Genetik / Molekularbiologie
Naturwissenschaften Biologie Zellbiologie
Technik Umwelttechnik / Biotechnologie
Schlagworte Big Data • Biology • Combinatorial design • Deep learning • Design-Build-Test-Learn • Experimental Design • Industrial Biotechnology • in silico engineering • machine learning • Metabolic Engineering • Omics • Optimization • pathway design • pathway selection • Python • Scaling-up • Synthetic biology • systems biology
ISBN-10 3-030-29864-7 / 3030298647
ISBN-13 978-3-030-29864-7 / 9783030298647
Zustand Neuware
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