Plant Genomics Databases

Methods and Protocols

Buch | Softcover

336 Seiten

2018 | Softcover reprint of the original 1st ed. 2017
Humana Press Inc. (Verlag)
978-1-4939-8263-9 (ISBN)

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This volume introduces databases containing the results from the recent revolution in sequencing technologies. Chapters in Plant Genomics Databases: Methods and Protocols describe database content, as well as typical use-cases. Some chapters explore databases that primarily present genome sequences focusing on one or a few related species, while others include additional datatypes and/or data from various plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and comprehensive, Plant Genomics Databases: Methods and Protocols is a valuable resource for providing clear guidance in accessing an important collection of plant databases that can be used to add biological value to genomic data.

Ensembl Plants: Integrating Tools for Visualizing, Mining and Analyzing Plant Genomics Data.- PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data.- Plant Genome DataBase Japan (PGDBj).- FLAGdb++: A Bioinformatic Environment to Study and Compare Plant Genomes.- Mining Plant Genomic and Genetic Data Using the GnpIS Information System.- The Bio-Analytic Resource for Plant Biology.- The Evolution of Soybean Knowledge Base (SoyKB).- Using TropGeneDB: a Database Containing Data on Molecular Markers, QTLs, Maps, Genotypes, and Phenotypes for Tropical Crops.- Species-Specific Genome Sequence Databases: A Practical Review.- A Guide to the PLAZA 3.0 Plant Comparative Genomics Database.- Exploring Plant Co-Expression and Gene-Gene Interactions with CORNET 3.0.- PlaNet: Comparative Co-Expression Network Analyses for Plants.- Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza sativa and Other Plant Species.- Pathway Analysis and Omics Data Visualization using Pathway Genome Databases: FragariaCyc, A Case Study.- CSGRqtl: A Comparative Quantitative Trait Locus Database for Saccharinae Grasses.- Plant Genome Duplication Database.- Variant Effect Prediction Analysis using Resources Available at Gramene Database.- Plant Promoter Database.- Construction of the Leaf Senescence Database and Functional Assessment of Senescence-Associated Genes.

Erscheinungsdatum	16.08.2018
Reihe/Serie	Methods in Molecular Biology ; 1533
Zusatzinfo	136 Illustrations, color; 5 Illustrations, black and white; XII, 336 p. 141 illus., 136 illus. in color.
Verlagsort	Totowa, NJ
Sprache	englisch
Maße	178 x 254 mm
Themenwelt	Naturwissenschaften ► Biologie ► Botanik
Schlagworte	Epigenomics • expression and co-expression • Genome sequence • resequencing of individuals • species-specific databases • Transcriptomics
ISBN-10	1-4939-8263-X / 149398263X
ISBN-13	978-1-4939-8263-9 / 9781493982639
Zustand	Neuware