Computational Epigenomics and Epitranscriptomics
Springer-Verlag New York Inc.
978-1-0716-2964-2 (ISBN)
Cutting-edge and thorough, Computational Epigenomics and Epitranscriptomics aims to provide an overview of epiomic protocols, making it easier for researchers to extract impactful biological insight from their data.
DNA methylation data analysis using Msuite.- Interactive DNA methylation arrays analysis with ShinyÉPICo.- Predicting Chromatin Interactions from DNA Sequence using DeepC.- Integrating single-cell methylome and transcriptome data with MAPLE.- Quantitative comparison of multiple chromatin immunoprecipitation-sequencing (ChIP-seq) experiments with spikChIP.- A Guide To MethylationToActivity: A Deep-Learning Framework That Reveals Promoter Activity Landscapes from DNA Methylomes In Individual Tumors.- DNA modification patterns filtering and analysis using DNAModAnnot.- Methylome imputation by methylation patterns.- Sequoia: a framework for visual analysis of RNA modifications from direct RNA sequencing data.- Predicting pseudouridine sites with Porpoise.- Pseudouridine Identification and Functional Annotation with PIANO.- Analyzing mRNA epigenetic sequencing data with TRESS.- Nanopore Direct RNA Sequencing Data Processing and Analysis Using MasterOfPores.- Data Analysis Pipeline for Detection and Quantification of Pseudouridine (ψ) in RNA by HydraPsiSeq.- Analysis of RNA sequences and modifications using NASE.- Mapping of RNA modifications by direct Nanopore sequencing and JACUSA2.
Erscheinungsdatum | 02.02.2024 |
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Reihe/Serie | Methods in Molecular Biology |
Zusatzinfo | 61 Illustrations, color; 4 Illustrations, black and white; XI, 262 p. 65 illus., 61 illus. in color. |
Verlagsort | New York, NY |
Sprache | englisch |
Maße | 178 x 254 mm |
Themenwelt | Informatik ► Weitere Themen ► Bioinformatik |
Naturwissenschaften ► Biologie ► Genetik / Molekularbiologie | |
Schlagworte | Annotation • DNA Methylation • • Epiclomal • RnBeads • wg-blimp |
ISBN-10 | 1-0716-2964-6 / 1071629646 |
ISBN-13 | 978-1-0716-2964-2 / 9781071629642 |
Zustand | Neuware |
Informationen gemäß Produktsicherheitsverordnung (GPSR) | |
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